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Species belonging to selected taxon:

Lactuca sativa



ABOUT THIS RECORD

ID: MNEST046781
species: Lactuca sativa
source: microPC, original name: miR159

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGGGGTGAAGGGAGCTCC

miRNA*
AGCTCTCTATCGCCTCGACCC

mismatches: 1
bulges: 1

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pre-miRNA
GGAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTCC


dot-bracket secondary structure
((((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).))))))))..))))).))))))..)).)))))))))))))))))))



SIMILARITIES
miRBase ptc-MIR159e: 0.000009

PMRD ptc-miR159e: 0.000009

microPC miR319: 1e-94
UniProt no hits

RFAM MIR159: 0.0002

Identical with: miR319 from microPC (MNEST046103)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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